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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "genoaligner" in publications use:'
type: software
license: MIT
title: 'genoaligner: GPU-Portable Pairwise and Codon-Aware Multiple Sequence Alignment'
version: 2.0.0.9000
doi: 10.32614/CRAN.package.genoaligner
abstract: 'Sequence alignment from one portable C++17 core: edit-distance (Levenshtein
  / WFA-equivalent) and Smith-Waterman local pairwise alignment with score and CIGAR
  reconstruction, plus multiple sequence alignment in DNA, protein and codon-aware
  modes (MACSE-class: whole-codon indels that preserve the reading frame, optional
  frameshift refinement). The core builds and runs anywhere (it is the CPU backend,
  so it needs no GPU toolchain); the wavefront/GPU backend (ROCm/CUDA) computes the
  same results with acceleration and is tracked in the sibling C++ repository. A batch
  API aligns many pairs in one call and reports how many were resolved, so silent
  under-serving is impossible. Designed to slot into data.frame/tibble pipelines.'
authors:
- family-names: Robles-Fernandez
  given-names: Angel
  email: a.l.robles.fernandez@gmail.com
repository: https://alrobles.r-universe.dev
repository-code: https://github.com/alrobles/genoaligner-r
commit: d7a0767e8605f0537deb2b15a683bc5ae49d22e3
url: https://alrobles.github.io/genoaligner-r/
date-released: '2026-09-28'
contact:
- family-names: Robles-Fernandez
  given-names: Angel
  email: a.l.robles.fernandez@gmail.com