Package: phylopred
Type: Package
Title: Predicting Species Interactions from Phylogenetic Distance
Version: 0.1.0
Authors@R: c(
    person("Angel", "Robles", , "a.l.robles.fernandez@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-4674-4270")))
Description: Tools to model and predict host-parasite (and other
        pairwise species) interactions from phylogenetic distance under
        presence-only data. Provides pairwise host-sharing logistic
        models with cluster-aware bootstrap and slope comparison
        between clades, presence-only performance metrics (a threshold
        efficiency metric and a phylogenetic partial receiver operating
        characteristic (ROC) adapted from Peterson, Papes and Soberon
        (2008) <doi:10.1016/j.ecolmodel.2007.11.008>),
        positive-unlabeled host prediction, and leave-hosts-out
        validation. Methods build on Robles-Fernandez and Lira-Noriega
        (2017) <doi:10.3389/fams.2017.00017>.
License: MIT + file LICENSE
URL: https://github.com/alrobles/phylopred,
        https://alrobles.github.io/phylopred/
BugReports: https://github.com/alrobles/phylopred/issues
Encoding: UTF-8
LazyData: true
Imports: graphics, stats, utils, xplus
Suggests: ape, cofid, knitr, rmarkdown, testthat (>= 3.0.0)
Depends: R (>= 4.1.0)
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Repository: https://alrobles.r-universe.dev
Date/Publication: 2026-09-27 13:56:28 UTC
RemoteUrl: https://github.com/alrobles/phylopred
RemoteRef: HEAD
RemoteSha: ee81eb0b56a0ab8b7236b03b53132362ac943480
NeedsCompilation: no
Packaged: 2026-10-15 12:06:24 UTC; root
Author: Angel Robles [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4674-4270>)
Maintainer: Angel Robles <a.l.robles.fernandez@gmail.com>