Package: xplus
Title: Positive and Unlabeled Learning from Unbalanced Cases and Sparse
        Structures
Version: 1.0.2
Authors@R: 
    person("Angel", "Robles", , "a.l.robles.fernandez@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-4674-4270"))
Description: Provides PLUS-derived extensions for positive and
        unlabeled (PU) learning from unbalanced cases and sparse
        structures, based on Zhou et al. (2022)
        <doi:10.1371/journal.pcbi.1009956>. Iteratively relabels
        unlabeled observations via penalised logistic regression and
        pseudo-label updates, then refits a final sparse model.
        Includes weighted bootstrap sampling, convergence diagnostics,
        prediction, coefficient extraction, and assessment utilities.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.1.0)
LazyData: true
Imports: glmnet (>= 4.1-8), Matrix, methods, stats, tibble, utils
Suggests: covr, knitr, rmarkdown, survival, testthat (>= 3.0.0)
Config/testthat/edition: 3
URL: https://github.com/alrobles/xplus,
        https://alrobles.github.io/xplus/
BugReports: https://github.com/alrobles/xplus/issues
Config/roxygen2/version: 8.0.0
Repository: https://alrobles.r-universe.dev
Date/Publication: 2026-09-27 05:09:01 UTC
RemoteUrl: https://github.com/alrobles/xplus
RemoteRef: HEAD
RemoteSha: e9f545aa89552784f98694cb0fbfa6f4f65017ec
NeedsCompilation: no
Packaged: 2026-09-27 14:18:15 UTC; root
Author: Angel Robles [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4674-4270>)
Maintainer: Angel Robles <a.l.robles.fernandez@gmail.com>