sobol - Quasi-Monte Carlo Sobol Sequence Generator

Provides a fast and efficient implementation of Sobol sequences for quasi-Monte Carlo methods. The Sobol sequence is a low-discrepancy sequence with the property that for all values of N, its subsequence x1, ..., xN has a low discrepancy. It can be used to generate quasi-random numbers for use in Monte Carlo integration and other simulation methods. This implementation is based on the algorithms described by Bratley and Fox (1988) <doi:10.1145/42288.214372> and uses direction numbers from Joe and Kuo (2008) <doi:10.1145/1358628.1358630>. The package includes both batch and incremental interfaces with support for arbitrary starting indices and reproducible sequences. It uses 'Rcpp' for efficient 'C++' integration.

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cpp

5.02 score 13 scripts 68 downloads

rosario - A Null Model Algorithm to Analyze Cyclical Data in Ecology

Implements a null model analysis to quantify concurrent temporal niche overlap (i.e., activity or phenology) among biological identities (e.g., individuals, populations, species) using the Rosario randomization algorithm (Castro-Arellano et al. 2010) <doi:10.1111/j.2041-210X.2010.00031.x>.

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4.30 score 3 scripts 165 downloads

ucminfcpp - 'C++' Reimplementation of the 'ucminf' Unconstrained Nonlinear Optimizer

A modern 'C++17' reimplementation of the 'UCMINF' algorithm for unconstrained nonlinear optimization (Nielsen and Mortensen, 2011, <doi:10.32614/CRAN.package.ucminf>), offering full API compatibility with the original 'ucminf' R package but developed independently. The optimizer core has been rewritten in 'C' with a modern header-only 'C++17' interface, zero-allocation line search, and an 'Rcpp' interface. The goal is numerical equivalence with improved performance, reproducibility, and extensibility. Includes extensive test coverage, performance regression tests, and compatibility checks against 'ucminf'. This package is not affiliated with the original maintainers but acknowledges their authorship of the algorithm and the original R interface.

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cpp

3.40 score 6 scripts 515 downloads

maxentcpp - Maximum Entropy Species Distribution Modeling ('C++' Implementation)

'C++' implementation of Maximum Entropy (Maxent) species distribution modeling with R bindings via 'Rcpp'. Provides a high-performance reimplementation of the Maxent algorithm for modeling species geographic distributions from occurrence data and environmental variables, following Phillips et al. (2006) <doi:10.1016/j.ecolmodel.2005.03.026>. Supports linear, quadratic, product, hinge, and threshold feature transformations, spatial projection in raw, logistic, and cloglog scales, and model diagnostics including Area Under the ROC Curve (AUC), variable importance, response curves, and Multivariate Environmental Similarity Surfaces (MESS) maps.

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cpp

3.11 score 13 scripts

cofid - Copepod Fish Interaction Database

A curated list of copepod-fish ecological interaction records. It contains the taxonomy of the copepod and the fish and the publication from which the information was obtained. This database contains only marine and brackish water fish species. It excludes fish species that inhabit only freshwater.

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2.70 score 3 scripts 183 downloads

mddmaps - Download World Mammal Maps

Lightweight maps of mammals of the world. These maps are a comprehensive collection of maps aligned with the Mammal Diversity Database taxonomy of the American Society of Mammalogists. They are generated at low resolution for easy access, consultation and manipulation in shapefile format. The package connects to a binary backup hosted in the Digital Ocean cloud service and allows individual or batch download of any mammal species in the mdd taxonomy by providing the scientific species name.

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1.70 score 1 stars 603 downloads

sobol - Quasi-Monte Carlo Sobol Sequence Generator

Provides a fast and efficient implementation of Sobol sequences for quasi-Monte Carlo methods. The Sobol sequence is a low-discrepancy sequence with the property that for all values of N, its subsequence x1, ..., xN has a low discrepancy. It can be used to generate quasi-random numbers for use in Monte Carlo integration and other simulation methods. This implementation is based on the algorithms described by Bratley and Fox (1988) <doi:10.1145/42288.214372> and uses direction numbers from Joe and Kuo (2008) <doi:10.1145/1358628.1358630>. The package includes both batch and incremental interfaces with support for arbitrary starting indices and reproducible sequences. It uses 'Rcpp' for efficient 'C++' integration.

Last updated

cpp

1.11 score 13 scripts

maxentcpp - Maximum Entropy Species Distribution Modeling ('C++' Implementation)

'C++' implementation of Maximum Entropy (Maxent) species distribution modeling with R bindings via 'Rcpp'. Provides a high-performance reimplementation of the Maxent algorithm for modeling species geographic distributions from occurrence data and environmental variables, following Phillips et al. (2006) <doi:10.1016/j.ecolmodel.2005.03.026>. Supports linear, quadratic, product, hinge, and threshold feature transformations, spatial projection in raw, logistic, and cloglog scales, and model diagnostics including Area Under the ROC Curve (AUC), variable importance, response curves, and Multivariate Environmental Similarity Surfaces (MESS) maps.

Last updated

cpp

1.11 score 13 scripts